I recently came across an issue where I had an Infopath form that needed access to a list that had over 10,000 items (Don't worry the form used a web service to filter the number of items returned). When I opened the form, I received a message complaining I was trying to query a list with more items than my list threshold, even though I was technically only returning only about 100 items.
There were a couple options.
Option 1: Increase the Resource Throttling through Central Administration.
Option 2: User Power shell to increase Resource Throttling for just the list.
$Site = Get-SPWeb http://siteurl
$List = $Site.List["List Name"]
$List.EnableThrottling = $false
$List.Update()
I didn't need to increase the throttling amount for all of my environment, so I opted for Option 2 as most of our list and libraries have well below 10,000 items. In most cases, I would recommend Option 2.
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